Suoqin Jin

@tomerweiss9 Unfortunately, it does not support this. But I think it is possible to do it by modifying the sector order in `netVisual_chord_gene`

@toushirou1220 I am afraid the current implement does not give more digits of the p-value due to the permutation test we used.

@zandigohar I have applied CellChat to the same experimental design as yours. I suggest to do the comparison across time points and conditions separately. Based on the biological questions you...

@Tomer9w @sdzxzh Thanks for pointing it out. Adding net[is.na(net)]

Fix it now in github. On Thu, Sep 22, 2022 at 12:16 AM luxhexmaster ***@***.***> wrote: > Hi all, can you explain how you added "net[is.na(net)]

@theCastleBuilder When using `raw.use = FALSE`, it means it will use the projected data, which is an imputed data based on the PPI network. Thus you may consider to use...

@HaTonemann It is true that the amount of clusters may affect the results of the permutation testing. I think you can subset the cell clusters based on the biological questions...

@CreatorZZY The similarity is computed using the inferred network that contains all cell clusters.

@CreatorZZY Can you please explain it in details? i have no idea on your question.

@LucaTucciarone Please try this `cellchat