Suoqin Jin

@margotvanriel The simple way is to re-name your cluster names. Cell labels cannot contain `0`!

@ACastanza You can run CellChat on numerical clustering, but it should start from 1,2,... (not 0). I agree that it will be nicer to deal with the case with '0'.

@meganrussell24 Clearly, you have not run the key part of cellchat. You should at least run `computeCommunProb()`

@meganrussell24 This is not expected. You should check your input data and the [email protected]

@iamGaryLiao This function cannot do it. But I think you can do it using other functions such as the one showing a heatmap.

@superman2412 It looks ok. Can you show me the [email protected] and unique(cellchat@idents)?

@superman2412 The data matrix looks good. The error information you posted is not much informative. Can you run the source code of this function line by line to give more...

@superman2412 Can you please check the edited codes you shared? There is an error when running on my computer. Error in elsif(yes = pbapply::pbsapply) : could not find function "elsif"...

@EvelynZav It is possible, but you need to modify the codes below ` values

@LaviCor You can run the source code of this function line by line and see why it also retain interactions from unexpected cell pairs. I guess the code need a...