Maddy Creach

Hello! Do you know how long this step usually takes? This step has been running for about 3 days so far for me and I just want to make sure...

Hello again! I just tried running that command and the alignments.txt file was not generated and still no error message.

Would it be helpful if I emailed you the files that I’m using to see if you can see a problem I’m not seeing?

Yes! The problem was the heading on my fasta files, yahs requires them to have a certain heading format to work correctly.

> Does "results/reads/22558Bue_BER03/input_files.txt" have the correct file paths, are the files non-zero in size? Does the log "logs/count_kmers/kmc/22558Bue_BER03/kmc_canon.log " have any extra info in it? Sometimes it helps to load...

> Does "results/reads/22558Bue_BER03/input_files.txt" have the correct file paths, are the files non-zero in size? Does the log "logs/count_kmers/kmc/22558Bue_BER03/kmc_canon.log " have any extra info in it? Sometimes it helps to load...

The problem was with one of the samples I was running when removed kmc_canonical ran with no issue!

> Hooray! Glad it worked. I now have an error with kmer_stats, I've attached the log file here. I tried to activate the conda environment and run the command but...

I am also having this issue but the above solution did not solve the error for me, is there a different solution? Thanks for any help!

> > I am also having this issue but the above solution did not solve the error for me, is there a different solution? > > Thanks for any help!...