wort

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Bumps [mako](https://github.com/sqlalchemy/mako) from 1.1.6 to 1.2.2. Release notes Sourced from mako's releases. 1.2.2 Released: Mon Aug 29 2022 bug [bug] [lexer] Fixed issue in lexer where the regexp used to...

dependabot[bot]

Bumps [numpy](https://github.com/numpy/numpy) from 1.22.0rc3 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...

dependabot[bot]

Bumps [httpie](https://github.com/httpie/httpie) from 2.6.0 to 3.1.0. Release notes Sourced from httpie's releases. HTTPie 3.1.0 SECURITY Fixed the vulnerability that caused exposure of cookies on redirects to third party hosts. (#1312)...

dependabot[bot]

Still need to validate before merging (run with both fastq-dump and sracat, see if signatures match)

luizirber

running a gubaphage query

5

Hi Luiz, Titus, I was wondering if you could please run a Wort query across all metagenomes for the Serratus people? I seem to have understood from your talk that...

rchikhi

Calculating SAC on metagenome clusters

3

@luizirber, one more thing for today (not intending to distract you), it would be really interesting if you could calculate the species accumulation curve (SAC) for hash sets in clusters...

nmb85

Schemathesis for API testing

1

https://github.com/kiwicom/schemathesis

luizirber

Using the `computed` field from the models

luizirber

For now only keeping the latest version for each assembly, but might be useful to add previous versions (if data is still available) too, especially because other databases (like GTDB)...

luizirber

Pointers for fungi in https://github.com/luizirber/2017-jgi-download

luizirber