Sören Wacker

Results 78 comments of Sören Wacker

I not sure what is the best for the community. There is also the mzMLb format that was recently announced. The strength of the parquet format is its columnar format,...

![read-speed-ms-file-formats](https://user-images.githubusercontent.com/3391614/117333080-cc6bc480-ae55-11eb-81df-f88206e8a975.png) I made a test with 12 small metabolomics files converted to different formats. For _mzXML_ and _mzMLb_ I used the parsers from `pyteomics` and for _mzMLb_ from `pymzml`. For...

BTW you can find the files that I used. The files were downloaded from https://www.ebi.ac.uk/metabolights/MTBLS1569/descriptors. And the converted files can be downloaded from https://soerendip.com/dl/MTBLS1569/ I used the 12 files starting...

Apparently, the mzMLb can be faster if generated with a better compression type. It seems for some reason the compression is zip in this files.. there is another dependency that...

I think, that is what I am facing right now. Connected via SSH tunnel to a main monitor node that should connect to all workers, but unable to see them,...

Could you add 2.3, and 2.4 ?

I also get this, and cannot execute any notebook cells: dependencies: ``` - _libgcc_mutex=0.1 - _openmp_mutex=4.5 - anyio=4.3.0 - argon2-cffi=23.1.0 - argon2-cffi-bindings=21.2.0 - arrow=1.3.0 - asttokens=2.4.1 - async-lru=2.0.4 - attrs=23.2.0...