Sergey O
Sergey O
Thanks! Do you have an example input where this change is needed?
🙏 thanks On Wed, May 10, 2023, 3:37 PM Yingyao Zhou ***@***.***> wrote: > In the prep_pdb.py file, line 434 > > im = ignore_missing[n] if isinstance(ignore_missing,list) else ignore_missing >...
Gradient compute takes about 2X more memory. Semigreedy is just trying random mutations and accepts those that improve loss, which does not require gradient compute. On Wed, Mar 8, 2023,...
I don't get any error, it just stuck loading forever. All white screen.
The fix_pos uses PDB numbering (so that would be 1-index for most PDBs)
Hi Alex, We usually only do changelog when the updates actually change the result. So far all the changes since v1.5.0 have been focused on making sure ColabFold still runs...
Unfortunately... Unless you get a GPU with larger amounts of memory, there isn't an easy to reduce memory usage :( We tried implementating crops during design, but this didn't work...
@adrienchaton I apologize for the delay. Was travelling. Here is the script we used to convert weights: https://github.com/sokrypton/ColabDesign/tree/main/mpnn/convert_weights
I just upload the script 🤪 Tell me if you run into any issues.
Awesome! Tell me if you wanna contribute the converted weights, would be happy to add them to the repo :D