ColabDesign
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sokrypton
Making Protein Design accessible to all via Google Colab!
Hi everyone and thanks for the great work you are sharing! It is awesome that ProteinMPNN is integrated within ColabDesign. I assume you have converted the original pytorch checkpoints to...
Hi @sokrypton, I am wondering if it is possible to run Colab Design Locally. Thanks.
Hey, I am wondering if the "i_pae" score when running the designability_test.py is the same as the pAE_interaction score mentioned in the RFDifussion Git Hub. I see it is being...
Hi, I have run a test by af_cyc_design. The result cyclic pepitide are consist of L-Amino acid. Is it possible to generate cyclic pepitide consist of L-Amino and D-Amino acid?
Hi, Just a little bug. When manually assigning a point group (rather than using auto) in partial diffusion mode, the contigs that are generated have lots of erroneous elements added....
Hello. I am working on generating binders for a target which seems like a difficult one as most runs give binders with very low i_ptm. I thought I could increase...
Hi, Is there a way to "partially" fold a structure? For example, sequence A is 500 AAs and I know the structure of the sequence from residue ID 250-350. Is...
Dear developers, I'm trying to use ColabDesign AF to design a sequence using the `fixbb` protocol fixing sites with a list of positions as follows: ```python model = mk_afdesign_model(protocol="fixbb") model.prep_inputs(pdb_filename="mystruc.pdb",...
