ColabDesign

Making Protein Design accessible to all via Google Colab!

pip install git+https://github.com/sokrypton/ColabDesign.git

• TrDesign - using TrRosetta for design (support for TrMRF coming soon)
• AfDesign - using AlphaFold for design

(WIP) Not yet fully integrated into ColabDesign

• MSA_transformer
• Potts models (GREMLIN, mfDCA, arDCA, plmDCA, bmDCA, etc)
• ProteinMPNN
• RfDesign - using RoseTTAFold for design

Presentations

Slides Talk

Contributors:

• Sergey Ovchinnikov @sokrypton
• Justas Dauparas @dauparas
• Weikun.Wu @guyujun Levinthal.bio
• Shihao Feng