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Template mode in AFcluster fails to retrieve pdb

Open leonart3 opened this issue 1 year ago • 0 comments

When template mode is set to custom and PDB_ID and chain_ID are defined, the code fails to retrieve the pdb. This presumably has something to do with the module that ColabDesign uses to fetch pdbs. Does colabdesign use something instead of get_pdb or does this need to be defined somewhere in the installation code?

eps max: 17.0 18 clusters 116 seqs not clustered aligning template

NameError Traceback (most recent call last) in <cell line: 153>() 162 propagate_to_copies=propagate_to_copies, 163 use_seq=not rm_sequence, --> 164 get_pdb_fn=get_pdb, 165 align_fn=run_hhalign) 166 batches.append(batch)

NameError: name 'get_pdb' is not defined

leonart3 avatar Nov 04 '24 16:11 leonart3