Soji A.

Any developments on this issue? I am having the same problem. I have a target dataset with raw data but the atlas does not contain the raw matrix.

For me it is `sca.models.SCVI.setup_anndata(source_adata, batch_key=condition_key)` This source_data is a reference atlas, that has no `adata.raw` object. The data was not formatted similarly to the target and some transformation had...

I'm having a similar issue and I'm not really sure why. I've also tried using the gtf formatter with no luck. It took 0:00:00.01 to process chromosome NW_023397527.1 Traceback (most...

> Can you please send me the exact command you tried for `talon_initialize_database`, as well as the version number of TALON that you're using? talon_initialize_database --f ../../reference/GCF_004126475.2_mPhyDis1.pri.v3_genomic.gtf --a discolor_annot --g...

Yes, while that one does run for me as well (it doesn't inlcude NW_023397527.1 ), I cannot get other cuts of the file to work, it creates an error as...

You're right. Strange. I've removed it an it works just fine. Was able to fully process everything. Thanks.