sofia

I am also attaching a picture showing how it looks the expression of the different L-R of RELN pathway among the different clusters, in the two datasets (light blue =...

Thank you very much for your fast reply @sqjin The expression of the receptor units is very low in both groups. By indicating computeAveExpr(cellchat, features = c("RELN","ITGA3","ITGB1), type = "truncatedMean",...

Same problem here, I used [YitengDang] code modification to netClustering() and it worked. However, while using netVisual_embedding(cellchat, type = "functional", label.size = 3.5, pathway.remove = cellchat@options$pathways.ignore) I obtain the following...

Dear sqjin, thank you very much for offering help. I would be happy to share the cellchat object with you so you can test. I have the same issue when...

Thank you very much for your prompt response, Regarding question 1: How can I make sure that the FASTQ reads are in the same order as the BAM reads? For...

Have you figured out what "Insertion Size Peak (evaluated by paired-end reads): 0" means? Thanks!

Yes they are. Thank you very much!

Hello, did you find answer for question 2.? I have the same. Thanks!

Hello, this question has not been answered.

Hello, thanks for providing solutions. I tried tt342400 solution:human