memes
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snystrom
An R interface to the MEME Suite
Some ideas: - container (see #9) - conda environment? (basilisk?) - sneaky .config hook on pkg install? (see basilisk source code)
**Utils** - [ ] MAST - A note on use of MAST: https://groups.google.com/d/msg/meme-suite/ZDnELfCZ0Z8/aIjwreEbBQAJ - [ ] SpaMo (?) - [ ] Centrimo - [x] MEME
## General - [ ] Set NOT_CRAN/meme_is_installed flags for remote systems ## Tools - [ ] TomTom - [ ] Dreme - [ ] AME - [ ] MEME -...
- running FIMO on sequence list input doesn't really make sense, so can either not support or unlist & warn.
currently, importAME requires the user to say which method they ran. This isn't very helpful to beginners and since we know the different colname types for different methods, it would...
Need to think about this some more & get feedback. If not using shuffled input it becomes difficult to label the regions by whether they're input or control sequences. **Possible...
--text can cause file to be very large and overrun systems with limited memory if trying to read the whole file into R. Solution is add a `return_type` argument with...