Najeeb Ashraf Syed
Najeeb Ashraf Syed
Dear Team, I am trying to downloading count data for all TCGA cancer but it seems TCGA-GBM is not getting downloaded. I am getting the same error every time. Could...
If you have encountered an error, please include: - [ ] minimal conf and lua files that you are using. - [ ] urls or actual files for annotations in...
Hi Brent, I am running an expression like below. ./slivar expr --vcf sample_merged_denovo_SIZEGT300_SETGT.vcf --ped family.ped --out-vcf temp.vcf --group-expr "denovo:kida.alts != 0 && kidb.alts != 0 && mom.alts == 0 &&...
I have tried running scarHRD on my data. > scar_score("sequenza/0200135321.seqz.gz",reference = "grch37", seqz=TRUE) Preprocessing started... Collecting GC information ........... done Error in split.default(lis_obj, names(lis_obj)) : first argument must be a...
Hi can you please share whatever command you have been using for Loftee annotation ? I am using below command and not getting even one LOF Mutation in my WGS...
Hi Team, I have been stuck with this issue for a long time. I was able to run NOVOPlasty on my local machine but when I am trying on azure...
Hi Andrew, As discussed at GI2018, It would be better if you just add documentation for understanding the output. Additionally it would be better to add all "KEYS: like "PLC5,LCH8"...
Hi Brent, I am trying to run below command seqcover report --genes LEPR,MC4R --fasta /gpfs/data_jrnas1/ref_data/Homo_sapiens/hs37d5/Sequences/WholeGenomeSequence/hs37d5.fa temp/*.bed.gz -r my_genes_report.html --hg19 I don't have internet access from my nodes. I think I...
Dear team, We are trying to install this software and are somehow stuck at this step. conda create -n crisprme python=3.8 crisprme -y Collecting package metadata (current_repodata.json): done Solving environment:...