single-cell-rna-seq
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snakemake-workflows
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
This workflow shall be extended as new types of analyses emerge. Please feel free to contribute or suggest further items to be added. * [ ] Add kallisto-based step for...
I was excited to try scRNA analysis through this Snakemake workflow, however, I encountered multiple errors trying to run the test dataset. I believe that I've corrected them here. In...
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A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.