Smruti Panda

How to divide our own dataset into test, dev and train data and assign them labels for fine tuning process

2

Hi @jerryji1993 , @Zhihan1996 , @project-delphi , @hjgwak , @timlautk , I read your paper and its very interesting. I have a dataset which consists of 6-mers only. I want...

Hii @jerryji1993 I had ran the pre-train python script since 25th Oct night and it is still running. Can you tell me how many steps or iterations it will take...

Hi all, its really a good paper, Thanks for the interesting work. Can you please tell me how to calculate fitness score from PyRo model? what's the input required for...

Fine-tuning process

4

Hi @Zhihan1996 , thanks for providing the code for finetuning DNABERT2. But there is no mention of how to generate the dev.tsv, test.csv and train.csv from our own dataset and...

how to run the code with fasta sequence data

7

Hi @Moeinh77 I have tried to run the code with my data but it is giving me certain errors like num classes are not defined, sequences are not defined. Can...