hdWGCNA

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pbmc <- ModuleEigengenes( pbmc, group.by.vars = "orig.ident" ) pbmc@misc$PBMC$MEs %>% head NULL

1

When i run this code to compute all MEs in the full single-cell dataset , however, the result of MEs is full of the character"NAN"，like the picuture just show. I...

Baozi9

Question about color of modules in volcano plots

6

Hello, I'm a bit confused about how color is used in the volcano plots vs in PlotKMEs and other plots In some of my volcano plots all the modules retain...

DelongZHOU

Conda Skeleton for Workflow Integration

1

Hi, Great to see the classic `WGCNA` implemented for single-cell/spatial datasets. Was wondering if you had any plans to upload to `conda` for package installation. Would make it super easy...

shahrozeabbas

ModuleFeaturePlot - add split.by option

1

I wanted to show the module expression for the modules I built for the mouse cortex split by treatment in the feature plot. It would be nice to have that...

ashleshagogate

Old links to description of statistics for module preservation

6

Thanks a lot for supporting and developing hdWGCNA, really great package! It seem that both links to description of statistics for module preservation (on page https://smorabit.github.io/hdWGCNA/articles/module_preservation.html) do not work (see...

Dimmiso

Question about module preservation / reproducibility when creating the modules

1

Hello, Is there a way to evaluate how stable the modules are? In the projection section you discussed how modules created from one set may not apply to another set....

DelongZHOU

Extracting Co-expression Matrices for Each Condition from hdWGCNA Consensus Network

2

Hi team, I've recently started using the hdWGCNA package and have been working with the [consensus network analysis](https://smorabit.github.io/hdWGCNA/articles/consensus_wgcna.html). I'm interested in extracting the co-expression matrices for each of the conditions...

TemiLeke

The parameter networkType of TestSoftPowers is invalid

2

**Describe the bug** Provide a clear and concise description of what the bug/error is. If there is an error message, please copy it here. **If you have more than one...

xiesiqiu

ModuleTraitCorrelation：Error in `stop_vctrs()`: ! Input must be a vector, not an environment.

4

When I try to use the ModuleTraitCorrelation function to Correlates categorical and numeric variables with Module Eigengenes or hub-gene scores, I get the following error: Error in `stop_vctrs()`: ! Input...

zhanglu11

Nice work, could we input our own co-expression network to this method? Thanks.

3

I have a co-expression network generated by other techniques, could we use that network to perform analysis? Thanks.

HelloWorldLTY