Steffen Möller

I have rerun 3.2.1 and it first failed with the same error, then added ``` --- a/bin/calc_frag_hist.py +++ b/bin/calc_frag_hist.py @@ -25,6 +25,7 @@ # Author: @chris-cheshire import os +import sys...

> Hi @smoe, could you just describe to me how this is different to our consensus peak calculation? The meta-context is that I felt very much insecure about how I...

Hi @borauyar, The gtf is from http://ftp.ensembl.org/pub/release-107/gtf/oryctolagus_cuniculus/ , the cdna from http://ftp.ensembl.org/pub/release-107/fasta/oryctolagus_cuniculus/cdna/ From the validation script, the ``` message(date(), " Checking annotation files for potential issues") ``` does not appear...

The warning was likely scrolling up too quickly for me to notice it. So we agree that we prefer to see this fixed (by whomever) in salmon. I'll update the...

Upstream is aware of that problem: https://github.com/COMBINE-lab/salmon/issues/598

That is good. I think I can help with the setup of travis if that is the work that you are concerned about. What is important to me is that...

After preparing a small patch you may want to run the pipeline _quickly_ to learn how this affects the reports. Also, among developers you want to make sure that everyone...

I need a bit of time to cross-check.

Please allow a quick sidetrack since this issue has the culprit in its title. I have just prepared the Debian package for hts-nim-tools and interpreted the .nimble build instructions on...

Hm. I might want to come back to that but for the moment - let's see where this carries us. I just added a symlink so either variant is fine....