Saad khan

Idents in Featureplot in Seurat outputs Idents name on top of the if Label is set to true. How do we see labels on top of scanpy UMAP plots.

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Hi, Seurat allows us to set an Ident and when we do a feature plot we can label that feature plot with that ident. If I were to achieve something...

Hi, I am trying to use hyperas with tensorboard call back. I am not using data generator for validation or training data but still it is giving me the error...

Increase the line size in STREAM plot

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I am trying to use a STREAM figure for publication and I did not see any option in the plot_stream function where the line size can be increased so it...

Error when running python commandline.

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I am getting this error when I try to run it directly through python script any particular reason for this? `Traceback (most recent call last): File "/opt/ibm/lsfsuite/lsf/10.1/linux2.6-glibc2.3-x86_64/etc/docker1_monitor.py", line 385, in...

Here selected terms is a vector of selected terms Warning messages: 1: In if (length(df$Count) > N) { : the condition has length > 1 and only the first element...

Hi, I was wondering where can I download similar file for mouse genome. `chromosome_arm_positions_grch38.txt` Thanks

How do I get LOH regions from cnv kit output?

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Hi the output of my CNV kit for the two files looks as following:- The .cnr file looks as this: ``` chromosome start end gene depth log2 weight chr1 12080...

Working with st_make_grid on spatial transcriptomics data

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Hi, I am working on spatial transcriptomics data where I have coordinates for cells and now I am trying to make a grid on top of them. I have multiple...

Hi, I was working on the m6A nanopore data for the first time around and I was looking to see how the no of m6A count (as output by Nanomod)...

Hi, I am trying to compare how coverage varies with regard to the epi-transcriptomic modification. When comparing the output of epinano/tombo (generated from the master of pores pipeline) I noticed...