Smit Kiri
Smit Kiri
The data is available here: https://portal.dbmi.hms.harvard.edu/projects/n2c2-nlp/ I had to send in a request to access, not sure if that's changed now
It should be annotated
I think I might've seen this before. Can you paste the detailed error here? The 2 frames between the entry point and the error are hidden here
> Thanks @smitkiri ! > > Here is a full error print out: > > ``` > --------------------------------------------------------------------------- > IndexError Traceback (most recent call last) > [](https://localhost:8080/#) in () >...
Closing this since it's been inactive for a while. Feel free to re-open this if you still face any issues.
Hey! I haven't worked with the BiLSTM-CRF NER code much, but I'll try to figure this out over the weekend. From a quick glance, I think it might have something...
You can get them from here: http://lavis.cs.hs-rm.de/storage/spert/public/datasets/ade/
Can you make sure that the `train_dev` and `test` variables [here](https://github.com/smitkiri/ehr-relation-extraction/blob/1ae6b6a8d37498c16ed333d061b7ec9f9494c1eb/generate_data.py#L184) are not empty lists?
Yeah it looks like the model isn't being trained correctly. You might need to look at the variables of train / val datasets and see if those make sense and...