smhaider

@LivUllmann just curious if 3.4.2 release was able to solve your problem? I am working with a vcf file with 61000 samples and 41000 variants. its been 22 days emmaxCMC...

> I don't think EMMAX works for >20K samples.. Hyun. ----------------------------------------------------- Hyun Min Kang, Ph.D. Associate Professor of Biostatistics University of Michigan, Ann Arbor Email : ***@***.*** > […](#) >...

thanks for your quick response. So by doesn't make sense I meant in my vcf file that I provided I had like 20k variants (not multiallelic: have already filtered them)...

ok that sounds perfect thanks again. looking forward to hearing from you. have a nice weekend :)

Hey Good Morning, Thank you so much for the quick look up and sorry for my late response I was travelling. ok I will let our cluster team know about...

@jonathonl Thanks again for your quick response. I just tried the analysis again but unfortunately the results were same. Just to confirm things if we are using the right version...

@jonathonl Thanks again for your response. I just double checked the versions and re-ran the analysis again but unfortunately got the same results. for your reference and better understanding I...

oh yes I am so sorry I forgot that I filtered for multi-alleles after this vcf. I mixed it with another vcf file my bad. and I will test it...

@jonathonl the link you provided is broken can you please share it again? https://github.com/statgen/EPACTS/archive/98d7ff7c0f0831d521324f16671d8fa989800f63 unable to access this link. Kind Regards, Haider

thanks again will get back to you soon :)