Shareef Dabdoub

@iamskok Your PATH setting has 'node' included at the end. Remove that and it should be fine: { "PATH": ":/Users/skok/.nvm/versions/node/v10.9.0/bin" }

Another use for this feature would be to calculate genome coverage with something like [bedtools](https://bedtools.readthedocs.io/en/latest/content/tools/genomecov.html).

Just checking in post-1.0 release. Any updates on the PMC datasource?

Hi Flo, I haven't updated to the latest (10.1) version (should start working on that), but I have a Kraken2+bracken build for v9.15 of eHOMD. Shareef

Although, after re-compiling with the threads function, it still complains with anything >1, and I have OMP_NUM_THREADS set correctly for building with kraken2, and it works there.

Here is the list of databases: - kofam_hmm - kofam_ko_list - uniref - pfam - pfam_hmm - dbcan - dbcan_fam_activities - dbcan_subfam_ec - vogdb - vog_annotations - viral - peptidase...

Hi @bgruening Thanks for the notice. I'm working on updating a few things, but I'll try to get a new release out soon. Shareef

https://quay.io/repository/biocontainers/bowtie2?tab=tags

@jamesbraza Looks great! The only thing you might consider adding is that Singularity/Apptainer containers can be created from the Docker containers using the singularity pull command, for example: `singularity pull...

Singularity is essentially just Docker optimized for cluster computing.