Bracken icon indicating copy to clipboard operation
Bracken copied to clipboard

kmer2read_distr uses omp_get_num_procs() instead of omp_get_num_threads() to check the validity of the -t parameter

Open smdabdoub opened this issue 1 year ago • 1 comments

https://github.com/jenniferlu717/Bracken/blob/699e89169b72c5330c64259dcbafa1a40133f3f2/src/kmer2read_distr.cpp#L170

smdabdoub avatar Nov 07 '22 13:11 smdabdoub

Although, after re-compiling with the threads function, it still complains with anything >1, and I have OMP_NUM_THREADS set correctly for building with kraken2, and it works there.

smdabdoub avatar Nov 07 '22 13:11 smdabdoub