Spencer Mahaffey

Thank you for taking a look at this. Maybe the length of the IDs is a problem when that string becomes excessively long. I didn't do anything to the IDs...

Thank you both very much. Unfortunately it's caused by a very large number of reads having the same sequence so I've filtered it to a sam/bam containing only those reads...

Thank you so much for continuing to maintain this resource and taking time to look at the problem. I assume this is a fairly unique problem, but without those changes...

Thank you so much. Yes you have a valid point about saving computation time/storage/electricity/money. The problem is that while miRDeep2 is designed thoughtfully, other software does not seem to handle...