slusna-dominika

I run this sequence of steps: echo "Step (1) Preprocessing the diffusion data: Motion and eddy current correction" eddy_correct $data_base/$subject_i/data/dwi.nii $data_base/$subject_i/data/eddy_corrected_data.nii.gz 0 cp $data_base/$subject_i/data/dwi_bvals $data_base/$subject_i/data/eddy_corrected_data.bvals cp $data_base/$subject_i/data/dwi_bvecs $data_base/$subject_i/data/eddy_corrected_data.bvecs echo "Step...

Dear Jakob, Could it be that with the new master branch, there is a new error which results in: This issue has already appeared in https://github.com/MIC-DKFZ/TractSeg/issues/80 Step (7) Run fiber...

Sure! I pushed my data to [this repository ](https://github.com/slusna-dominika/example-dwi-data.git) and added you as a collaborator. Thank you!

Hello Jakob, I am sorry to open up this issue again, but regardless of the newest master, the FA_MNI.nii.gz and any other output image in MNI still do not coincide...