Rogier
Rogier
**Describe the bug** If a download of a dataset gets interrupted, the `mk.datasets.get(...)` function will fail on retries: ``` FileNotFoundError: [Errno 2] No such file or directory: '~/.meerkat/datasets/imagenette/full/imagenette2/noisy_imagenette.csv ``` **To...
The `group_by` argument of `DicomReader` currently defaults to `EchoNumbers`, which is not commonly present in DICOM files. Typically, I would only load one DICOM study and not use grouping at...
For some DICOM datasets I would like to order the slices based on multiple tags. For example, in a dataset with a `TemporalPositionIdentifier` present, I would like to sort by...
Reproducible with CANDID-PTX first CXR.
The orientation/affine is incorrectly specified for 2D images that lack the required DICOM attributes and use the fallback values.
Allow users to save the headers to disk: `MedicalVolume.save_headers`. Initially supported format will be DICOM+JSON, whilst stripping all pixel data.
This issue keeps track of the supported DICOM Storage Classes (IOD). Supported SOP Class Name SOP Class UID IOD Specification (defined in PS3.3) :white_check_mark: Computed Radiography Image Storage 1.2.840.10008.5.1.4.1.1.1 Computed...
If DICOM files such as presentation states are stored alongside/in the same folder as the scan, it will crash the loading process of pyvoxel. We can let the user explicitly...
Voxel tries to open all different types of DICOM IODs. (This can lead to bugs, such as opening presentation states alongside scans, but this is beyond the scope of this...
This is a tracker issue for DICOM header synchronization. Wrangling with data inside `MedicalVolume` will likely invalidate the original DICOM headers. To be able to write the volume back to...