Kamil Slowikowski

@AndrewSkelton - Is it true that you are not seeing issues on Ubuntu but you are seeing this issue on macOS 10.15.4? - Are you able to install any other...

@clarsenEmory @petervangalen @newuser0101 @13mhzeng @ilonliu @RMolania @ankushs0128 Please consider sharing more information. By sharing the complete output for the `sessionInfo()` command in R, we will learn: - What operating system...

The harmony package installs without issues on: - [macOS High Sierra 10.13.6](https://travis-ci.org/github/slowkow/harmony/jobs/705198403) - [Ubuntu 16.04.6 LTS](https://travis-ci.org/github/slowkow/harmony/jobs/705198406) - [Windows Server 2012 R2 x64 (build 9600)](https://ci.appveyor.com/project/slowkow/harmony) My best guesses: - Maybe something...

I used GitHub Actions and found that harmony installs without issues on: - macOS 10.15.5 Here, you can view the results for five different combinations of OS and R versions:...

Hooray! Thank you for letting us know, Andrew! Sorry for the long and tedious journey. I hope that this solves the issue for everyone. By the way, I'm not confident...

@ankushs0128 Thank you for reporting that the installation works on another macOS system. That helps us to confirm that the issue is not with harmony code, but instead with system...

@MRogne007 Did you follow the instructions here? https://thecoatlessprofessor.com/programming/r/uninstalling-the-r-development-toolchain-on-macos/

@MRogne007 Please consider sharing more information: ``` cat ~/.R/Makevars cat ~/.Renviron readlink -f $(which gfortran) readlink -f $(which clang++) ls -lah /usr/local/clang* ls -lah /usr/local/gfortran* ls -lah /usr/local/bin/gfortran* ls -lah...

@MRogne007 What happens if you try this? ```bash mv ~/.miniconda3{,.bak} # temporarily move the miniconda folder to disable it R -e 'devtools::install_github("immunogenomics/harmony") ```

Hi @ilonliu, thanks for the report. The data files are not essential. If they are causing installation issues, we should certainly modify them or simply remove them. I know this...