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Launch Cellguide in Browser

Open siegelna opened this issue 8 months ago • 0 comments

Hi, I am trying to use cellguide to visualize seurat objects. I am able to launch cellguide in the browser but, as you can see at the bottom of the page, nothing gets displayed on my end. I'm not sure if this is user-error on my end or a bug so I am reaching out.  

Steps to reproduce

# file: environment.yml

name: cellbrowser
channels:
  - bioconda
dependencies:
  - ucsc-cell-browser=1.2.6
mamba env create -f environment.yml
mamba activate cellbrowser

https://github.com/slowkow/cellguide?tab=readme-ov-file#step-3-copy-cell-guide-files


curl -s https://codeload.github.com/slowkow/cellguide/tar.gz/master | tar xvz

https://cellbrowser.readthedocs.io/en/master/quick_start.html

curl -k https://cells.ucsc.edu/downloads/samples/mini.tgz | tar xvz
cd mini
cbBuild -o html 
command cp -rf ../cellguide-master/www/* html/
cbBuild -o html -p 8888

Nothing loads in the browser

image

siegelna avatar Jun 12 '24 20:06 siegelna