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Invalid Haplotype Field Error During pggb to gbz Conversion Due to Incorrect Regex in P-line

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**1. What were you trying to do?** I was attempting to convert a pggb pangenome graph to gbz format for use in Giraffe. **2. What did you want to happen?**...

Understanding CNV Distribution and Counts Across Haplotypes

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I have recently begun studying CNVs (Copy Number Variations) and am utilizing the hg002 dataset for paraphase analysis. Upon comparing my paraphase results with the data available on your GitHub...

Enhancing somatic variant calling and execution speed

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Hello, I am working with HCC1395 data, analyzing tumor samples at 75x coverage and normal samples at 45x coverage. I utilized Clair3 to process the normal.bam file, generating a normal.vcf....

Questions Regarding Heterozygous Variants, Somatic Mutations, and Phasing in ClairS Usage

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Dear Clair Team, I am a member of the longphase development team. Recently, while using ClairS and studying related literature, I have observed some results that raised a few questions...