slmiles

POLCA Sorting and indexing alignment error

7

Hi, I am trying to run POLCA but I am getting the error ' Sorting and indexing alignment file failed' midway through. My command is: polca.sh -a genome.fasta -r "reads.fastq.gz...

Running raxML without -AVX2 options

8

Hi, I keep getting the error below when running gubbins Illegal instruction (core dumped) Command 'raxmlHPC-PTHREADS-AVX2 -T 4 -safe -m GTRGAMMA -s core.full.aln.snp_sites.aln -n core.full.iteration_1_reconstruction -t /home/ubuntu/slm/gubbins/tmp382_i35u/core.full.iteration_1.tre.rooted -f e -w...