Victor Montal

CLI denoise patch_size error

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## Description To update CLI documentation. When doing a CLI call for dipy denoise methods, if patch size is not provided with 3 values, the cmd return an ValueError. This...

Input expression matrix

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Hi all! I had great success using scanpy with snRNA data.My current project is build on bulk RNAseq data, and since I am using public data, I only have access...

Offline run of DiffDock-pp

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Consider to add utilities / modify code to work with offline computing resources. Most HPC do not have direct internet conection to internet. Thus, the use of torch.hub to download...

select specific sites for masif_seed_search

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I was trying to find an option to select a specific site (not residueID) to run the masif_seach docking algorithm. I was checking the code at [masif_seed_search_nn.py](https://github.com/LPDI-EPFL/masif_seed/blob/main/masif_seed_search/source/masif_seed_search_nn.py) and realized that...