Sébastien Letort
Sébastien Letort
Here is the patch for output as describe in issue #55 As mentionned it's a big changed. * check_kmer_overlap has been renamed compute_kmer_overlap as you suggested. I placed it outside...
I tested the new latest of besst. AGP output and GFF are still wrong. (my fault ! I'm the one who gave you the patch) I checked deeper the code...
I logged to a first pod (let say foo), then logged out. Then I logged to another pod (bar) (both are solidcommunity.net) -> username+pwd. I used menu from top right...
_askomics:entity_ is defined as a relation that is always true or does not exist. `up:Protein askomics:entity "true"^^xsd:boolean ;` It seems more relevant to describe it as a type : `up:Protein...
I propose to use by default an explicitly meaningless prefix. stg like : `prefix askomics: .` or whatever.
Many test are not unittest (test_start_endpoint, test_get_value from askView_test.py), some test files are fully commented (tripleStoreExplorer_test.py,SourceFileConvertor_test.py) and some test method test nothing (test_instance, test_set_param from ParamManager_test.py) !
In ask_view.py, methods load_ttl_into_graph,load_gff_into_graph,load_bed_into_graph,load_data_into_graph never set status to 'ko' in case of exception and except for the latter, the status is 'ok'. By the way those methods can be (partially)...
In the continuation of #289 , for the prefix value, it can be found in the endpoint, but I don't really know how. In void we can see the void:vocabulary...
It was a feature in my mind as all data of public endpoint are public. But as it can expose many entities, that can be confusing for the user. Also,...
Vocabulary used leads to misunderstanding. The class EndpointManager does not manage endpoints but ExternalAskomicsDatasetEndpoint (or something close). External endpoints are used as services, so recorded in virtuoso only. - EndpointManager:list_active_endpoints...