Shaw Kagawa

icon company Broad Institute icon location Cambridge, MA icon location Early-career researcher interested in contributing to scientific computing and biological research.

Results 2 comments of Shaw Kagawa

GeneMark `make_nt_freq_mat.pl` fails because of empty files

I am also encountering this issue on a fresh install (both git pull from main and via the latest release zip) with the test2 within example/tests. I was able to...

GeneMark `make_nt_freq_mat.pl` fails because of empty files

Updating the dependency `log_reg_prothints.pl` (in `scripts/log_reg_prothints.pl`) to the version found in the ProtHint (https://github.com/gatech-genemark/ProtHint/blob/master/dependencies/log_reg_prothints.pl) that keeps the al_score field in the output gff file in the ProtHint step seemed to...