Steven Marygold

Ah, so you're saying that while the EC differentiates between the EC:3.1.1.- grouping class and the the specific EC:3.1.1.1 enzyme, the GO just has GO:0052689 - which is used as...

_I'm more inclined to make a separate grouping term (that does not get a rhea)._ That works for me! If you did that, I guess all current children of GO:0052689...

Hi @hdrabkin Thanks for returning to this issue. The fix looks good to me. _Clean up: should goslim annotation to GO:0052689 be transferred to new term? (@SJM4)_ Not sure... But...

I don't think I know Todd's GitHub handle either - @patriciaplchan will know.

Thanks for your thoughtful reply @egchristensen! _the issue here is that SO is not representing commonly used sub-types of tRNA_ Partly. There are two separable but related issues here: 1....

It would probably be better not to change the names of the current SO terms (and assume that any current usage was intended to be for the cytosolic form) and...

This recent-ish eference may be useful wrt mitochondrial tRNAs: https://pubmed.ncbi.nlm.nih.gov/25734984/

_How do RNAcentral and FlyBase treat the sub-types of tRNA? Do they treat the sub-types in the same way? Do these location-dependent terms (nuclear, mitochondrial, and plastid tRNA) apply to...

@egchristensen If the proposal to have separate terms for the isotypes of cytosolic/mitochondrial/plastid tRNAs isn't going to fly (because they aren't sufficiently distinct from each other in terms of sequence...

These wikipedia links are useful: https://en.wikipedia.org/wiki/Electron_transport_chain https://en.wikipedia.org/wiki/Oxidative_phosphorylation