Sjoerd de Vries
Sjoerd de Vries
To be investigated what causes it.
- Modernize the use of asyncio. At the minimum, get rid of deprecation warnings. This affects jobless too. - More types and docstrings. Try to reduce the number of pylint...
including the instructions on how to set up env vars for the dirs for Seamless, seamless-tools (optional) and silk (optional), and SEAMLESS_DOCKER_IMAGE.
for all transformers in the context. This is to make it easy to install environments and then "try again"
Right now, a rather cryptic error message is returned if this is attempted.
This after mounting the FolderCell in "w" mode. FolderCell is dependent, shouldn't store an auth checksum to begin with.
Gives trouble with hcell["celltype"]
This is probably too restrictive. Better capture the error and store it on the Libinstance (accessible under .status). Otherwise, `interpret_arguments` needs to be beefed up to report the offending Libinstance.
See the examples tab on https://www.nextflow.io/ . Interesting examples: Blast, RNASeq, Machine Learning (other examples are either too simple or too messy). First, need to finish #183 . The Blast...