sj584

In a recent paper from RFdiffusion author, Joseph L. Watson, Accurate single domain scaffolding of three non-overlapping protein epitopes using deep learning (https://www.biorxiv.org/content/10.1101/2024.05.07.592871v1.full.pdf) It seems like RFjoint2 can inpaint single...

1) sequence recovery (sequence design) code request 2) generating .mdb file 3) PEFT 4) best model selection after training

1

Hi, I successfully ran the finetuning code using config/pretrain/saprot.py and config/Thermostability/saprot.py Then I newly got these questions I would really appreciate it if you could answer these. **1. Could you...

finetuning with MLM task

5

Awesome work :) I am thinking about finetuning this model on specific protein domain with MLM task. As in, starting from the SaProt model weights, further finetuning on un-labeled dataset....