sixone11

as I see, i just need to put the .bed file that contains the methylation status not the methylation level.I don't know if it can predict exact methylation value

the position of first intron

1

I am a little bit confused about the first intron, just using the first one in the introns.bed of each gene or we should also use the *.genepred file and...

Allow user to select percentiles for calculating methylation differences on a numerical covariate

1

I think it is very important to set the different threshold by user