simroux

Ok, so Step 1 failed even with a fresh directory. Can you list the content of "/rds/general/user/hz4918/home/jiqiuwu/data/test_virsorter/fasta/" ?

Could you list the content of your /rds/general/user/hz4918/home/jiqiuwu/data/test_virsorter/fasta/ folder, and specifically, is there a "_prots.fasta" file ? If not, then it is most likely an issue with the install of...

Hi Jiqiu, Can you check what is the content of the error log ? (should be an "err" file in "logs" directory) Best, Simon

Oh ! So that's the same issue as https://github.com/simroux/VirSorter/issues/74 , which can be apparently solved ? Bottom line is: something went wrong with the conda installation, and the script does...

Yes, these are not real errors, it's all good ! On Wed, Jun 3, 2020, 20:02 JiqiuWu wrote: > Thank you so much! I copied the Bio folder to the...

Hi, Which error are you referring to ? (there are a few different ones in this thread). Note that the original error was due to an aborted run, which led...

Hi Vishal, The files not mentioned in the Readme are internal files of VIrSorter, and not designed to be useful to the user. "Metric_files" folder has some metrics about the...

Hi, Please see section https://github.com/simroux/VirSorter#using-a-conda-virtual-environment-tested-on-ubuntu-and-centos Download the databases required by VirSorter which have been converted to be used with HMMER version 3.1b2. Change to the directory where you want the...

Right, this does not look like a problem. MCL (the clustering process) gives its output in the "standard error" file, but that is no cause for concern. Similarly, the "BLAST...

Hi Yuan and Jarrod, I believe that in both your cases, the issue you had was with the C script used to calculate enrichment statistics. This should now be fixed,...