simroux

Hi, Could you share the content of the log_out and log_err from VirSorter ? From what I see here, one guess might be that you are trying to run VirSorter...

Hi Xiaojun, The error seems to be specifically with the "autodie" module from perl, maybe it would be worth installing it as part of the conda installation (https://anaconda.org/bioconda/perl-autodie) if you...

I just realized your error is thrown at l. 37, which is where the script tries to read the contig file. Does the file "input_sequences.fna" exists, and is readable by...

This is really weird.. was the file "input_sequences.fna" created by VirSorter ?

Interesting.. I've never seen anything like this, and no user ever reported this type of error, so I'm not sure what's going on, but it's likely specific to your system...

Hi, VirSorter is using a sliding window approach to find "viral-like regions" within input contigs. When the "best" viral-like region covers less than 80% of the contig, VirSorter then considers...

Was the file you downloaded complete and intact ? As noted in the readme, you can check this with md5sum: `md5sum virsorter-data-v2.tar.gz #m5sum should return dd12af7d13da0a85df0a9106e9346b45`

It looks like the download was not complete, the file should be slightly larger than 3.88Gb. In any case, md5sum controls the integrity of the file, so if you don't...

Hi, This is weird, it seems to be a BioPerl error, but I have never seen it. Could you try to create a new bioperl sequence in a separate script...

The first step here would be to delete the output folder (the path provided to the "wdir" argument) and try again, usually this error is thrown because the output folder...