Simone Pignotti
Simone Pignotti
Hi, First of all, congrats for this ambitious project, it looks extremely promising. I would love to test it on my little home server, but unfortunately it's ARM-based (Odroid-HC2) and...
Hi, Thanks for maintaining this wonderful project! I have tried to load several audio units (AUv3) on an iPad pro 10.5 with iOS 13.3.1, but helio crashes with everything I...
Hi, Congratulations for your work, I love how supervisely makes it easy to annotate datasets and test new models on the fly, and I really appreciate your effort to make...
When `prophyle index` is used with the `-R` option (non-propagation mode), k-mer counts are set to 0 for every node.
Ideally, we should parallelize `prophyle_assignment.py` and find a way to balance the number of threads dedicated to `prophyle_index query` and to `prophyle_assignment.py`. ### 1st step Profiling the two programs and,...
Strain TaxIDs are [deprecated since 2014](https://www.ncbi.nlm.nih.gov/news/11-21-2013-strain-id-changes/). Sequences which had already been assigned at this level will remain though. This explains why many sequences in new RefSeq are assigned to internal...
I ran classify with both options for coverage and tie-lca by mistake, and the program exits without any explanation. We should not accept the two options together and return a...
The attached file [err1.txt](https://github.com/karel-brinda/MetaNG/files/343121/err1.txt) contains the sequences in the HMP which I didn't manage to assign to a taxid. This could be possible thanks to their accession number (http://www.ncbi.nlm.nih.gov/Sequin/acc.html).
See http://www.sphinx-doc.org/en/stable/extdev/appapi.html#sphinx-core-events
Launching `prophyle index bacteria.nw bacteria_idx` with 8 threads (but also 4, only works with 2) on a machine with 16GB of RAM (Karel's office) exceeds memory while assembling. The problem...