simon19891216

where is data-deepgo2016/test-mf-preds.pkl?

Indeed, I want to evaluate our annotation results using CAFA3. However, I found that only Fmax can be calculated by cafa3. I found another program (deepgoplus) can generate other values...

thank you! I will try it again! At 2023-04-03 17:23:55, "Maxat Kulmanov" ***@***.***> wrote: To evaluate CAFA3, we ran cafa3_data.py script to generate cafa test_data.pkl and the run our model...

Only gene IDs and GO IDs were contained in our annotation results. however, the labels and preds should be contained in the input file when using evaluate_cafa3.py. according to your...

> I think I have used [evaluate_cafa3.py](https://github.com/bio-ontology-research-group/deepgoplus/blob/master/evaluate_cafa3.py) script to generate them. Uncomment lines 124-132 when I used evaluate_cafa3.py, one of input files is predictions.pkl, how to generate this file? I...

furthermore, since the related functions have been developed, whether the evaluate_cafa3 can be added into your website?

Thank you. I will try it. At 2023-04-10 11:34:45, "pencorn" ***@***.***> wrote: hello simon，You can refer to https://github.com/bio-ontology-research-group/deepgoplus/blob/master/deepgoplus.py to generate predictions.pkl. line 186 — Reply to this email directly, view...

Thank you. In fact, I hope that DIAMOND can add a function similar to blastn in BLAST+, I firmly believe that this can better provide help for scientific research. Thanks...

this is my file [FPS_alignment.txt](https://github.com/user-attachments/files/20767521/FPS_alignment.txt)