Sigve Nakken
Sigve Nakken
Hi, I have used your nice tool for a long time, downloading and installing within a Dockerfile. It has worked perfect for my purposes (multiallelic variant decomposition). However, I am...
Hi, Thanks for a very useful package. For reasons I do not fully understand, I experience from time to time download errors when using `googledrive` to download data from some...
Hi, I am getting a warning for some variants related to slicing, which disables the plugin from working. Could this be related to strange input variants, or is this a...
Hi, Thanks for creating a very useful R package. I seem to be getting an error now, both using the BioConductor version (v2.50.3), as well as the version hosted on...
- Changes to support new structure of reference data - New HTML template based on quarto
Hi, Just been trying to use the service, but seeing an internal server error? Any chance of getting it up and running again? kind regards, Sigve
Hi, I've used cyvcf for a long time, and really enjoy the speed compared to PyVCF. Lately I've discovered some discrepancies however that make analysis somewhat cumbersome. It specifically deals...
Hi, I am installing cyvcf on my new Mac, but ran into trouble I have not experienced before. Cython v0.20.1 is used here. Do you have any idea why I...
Hi, Thanks for a very comprehensive resource! I have compiled [a list](https://www.dropbox.com/s/b6ny549bs8mb6f9/tcga_clinical_tissue_diagnosis.v18_20190708.tsv?dl=0) of unique diagnoses assigned to TCGA patients/samples. I was wondering whether there exist a mapping somewhere between OncoTree...
- Functionality to support new reference data management - Functionality to support RNA-seq (bulk) expression input - correlation against reference samples (TCGA/DepMap/Treehouse), preliminary outlier detection (TCGA only) - Functionality to...