Sigve Nakken

Might be an issue with the output filename (too long path?), just noticed this issue: https://stackoverflow.com/questions/17156445/why-i-get-this-error-writing-data-to-a-file

Would perhaps be useful for me to see whether there is an underlying bug related to the nature of the queryset also (if the filename issue is not the cause)?...

One more thing: pandoc version might be a matter, i.e. what do you see when you type `rmarkdown::pandoc_version()`?

Great! I'll point to this issue for a workaround solution if others experience the same. Closing this for now.

Hi Aidan, Untuitively this sounds very much like unexpected behaviour, ideally i'd like to have your test data to debug, if that's possible at all? Just for clarification, is it...

Hi, I experience the same issue. See my [related issue](https://github.com/rnabioco/valr/issues/384). I used [read_gtf()](https://rnabioco.github.io/valr/reference/read_gtf.html) from [valr](https://rnabioco.github.io/valr/index.html) that further depends on functionality from rtracklayer.

Hi Ya, Thanks for reaching out. Whad does "the SGE cluster" refer to? Would running with Singularity be a better option for you? If so, I will try to make...

Was not thinking along those lines, thanks for the input, Vlad!

Dear Sehrish, Thanks a lot for your input, highly valuable! Generally, I can say that what you suggest makes perfect sense as a further development of the workflow. And parts...

Hi Sehrish, Coming back to this: - What is the reference data from Hartwig? Although passing your own reference data my be quite challenging to process on the fly, I...