showteeth

I am sorry! I have refreshed page several times, and I installed "Snippets Menu" with **jupyter_contrib_nbextensions** and I get the rest of jupyter-notebook extensions installed smoothly with **jupyter_contrib_nbextensions**. **jupyter notebook...

Thanks for your feedback! [E-mail]([email protected])

Thanks for your kind advice! `ggpie` is designed to set through factor levels to deal with diverse needs. In your example, you only need to add single-line code to meet...

Hi, It's sure that you can use `ggcoverage` to visualize and annotate bacterial/viral genome coverage. 1. For a basic coverage plot, `ggcoverage` requires: * **track data (bigwig/bam/..., use bam for...

Hi, Can you show me the version you used? In the latest version (`remotes::install_github("showteeth/ggcoverage")`), I added `overlap.style` to control the gene overlap style. By default, each gene occupies a single...

Thanks for your timely feedback. This is indeed a bug, I will update it as soon as possible.

Hi, The error message says **object 'group' not found**, I guess that this may be caused by grouping genes. Would you mind providing the **modified GTF file**, **some test data**...

Thanks for your advice! I noticed you used `label_info = c("all")`, this is not the latest usage. To increase flexibility, [ggpie](https://github.com/showteeth/ggpie/blob/b2b8b9ab36e003eda60042b0ca208c15f481fdee/R/ggdonut.R#L7) enables users to combine different label information ("group", "count",...

Hi, ```R library(ggpie) library(ggplot2) # use labs or guides ggpie(data = diamonds, group_key = "cut", count_type = "full", label_info = c("count", "ratio"), label_type = "horizon", label_split = NULL, label_size =...

Why not try [rose pie plot](https://showteeth.github.io/ggpie/articles/ggpie_manual.html#rose-pie-donut-plot)?