shoutong263

This is the command I used: nohup bismark_methylation_extractor -p --parallel 40 --comprehensive --no_overlap --bedGraph --cytosine_report --CX_context --split_by_chromosome --counts --buffer_size 1500G --report --samtools_path /data01/masterHome/bshoutong/samtools/samtools --genome_folder /data01/masterHome/bshoutong/jiajihua/Sch.index wwz-guo2_R1_bismark_bt2_pe.bam

Thank you very much for your reply I analyzed the plant genome, which has 14 major chromosomes and over 2,000 scaffolds at the level. I tried the --scaffolds parameter later,...