shokohirosue

I understand `kpPlotBAMDensity` has an option to normalize by the number of reads. Is it possible to do the same for `kpPlotCoverage` or `kpPlotDensity`? Thank you very much!

Q: single end ATAC peak calling

2

Hi, I do know that this is far from ideal, but what's your opinion about the recommended parameters for single-end ATAC seq? Thank you so much for your help!

Using MNN corrected data for diffusion map generation

2

Hi Aaron, Do you think it is appropriate to use MNN corrected data for diffusion map formation too? Thank you for your help.