Sherry Liu

icon location Charlotte, NC

Results 10 comments of Sherry Liu

ImportError: cannot import name 'SCOPData' from 'Bio.Data'

If you're struggling to install AlphaFold locally, feel free to try https://www.tamarind.bio/alphafold, a website which offers a no-code interface for bioinformatics tools including protein structure prediction with AlphaFold for free.

Install third-party software stalls at 17%

If you're struggling to install AlphaFold locally, feel free to try https://www.tamarind.bio/alphafold, a website which offers a no-code interface for bioinformatics tools including protein structure prediction with AlphaFold for free.

docker.errors.APIError: 500 Server Error for http+docker://localhost/v1.43/containers/ee2565cd6294bdf23537e9fb81814d89cb240f8c02b23f24a0926e3c66b44aea/start: Internal Server Error ("could not select device driver "nvidia" with capabilities: [[gpu]]")

If you're struggling to install AlphaFold locally, feel free to try https://www.tamarind.bio/alphafold, a website which offers a no-code interface for bioinformatics tools including protein structure prediction with AlphaFold for free.

Failed to find source directory "/home/gpux1/alphafold/uniref90" to mount in Docker container.

If you're struggling to install AlphaFold locally, feel free to try https://www.tamarind.bio/alphafold, a website which offers a no-code interface for bioinformatics tools including protein structure prediction with AlphaFold for free.

Is it still running ? First time using Alphafold in local.

If you're struggling to install AlphaFold locally, feel free to try https://www.tamarind.bio/alphafold, a website which offers a no-code interface for bioinformatics tools including protein structure prediction with AlphaFold for free.

FileNotFoundError: [Errno 2] No such file or directory: '/home/xuhu/project/admet_ai/admet_ai/resources/data/reference_no_kd_ic50.csv'

If you're struggling to run ADMET locally, feel free to try https://www.tamarind.bio/admet. Tamarind is an online platform for bioinformatics tools that offers computational biology workflows, including ADMET, for free.

Issue when running the basic script

If you're struggling to install RFdiffusion locally, feel free to try https://www.tamarind.bio/rf-diffusion, a website which offers a no-code interface for bioinformatics tools including protein design with RFdiffusion for free.

Minimization fails with notebook relax_amber.ipynb

I also have this issue.

KeyError: '!' during conditional generation

If you're struggling to install EvoDiff locally, feel free to try https://www.tamarind.bio/evodiff, a website which offers a no-code interface for bioinformatics tools including protein design with EvoDiff for free.

Are pocket restraints with affinity prediction working?

Also seeing this issue