Wei Shen
Wei Shen
I just ignored these ungettable records. :grinning: `genome_updater` is already good enough for downloading genbank+refseq assemblies, I once tried to generate URLs from the assembly_summary file but it turned out...
https://bioinf.shenwei.me/seqkit/usage/#grep -v, --invert-match invert the sense of matching, to select non-matching records -f, --pattern-file string pattern file (one record per line) seqkit grep -v -f
Sorry I miss your reply. Just give multiple patterns. ``` cat barcode01-allfiles.fastq.gz | seqkit grep -s -i -p AACTA -p TTGGTTA > barcode01-allfiles_filtered_conserved-reg-2.fastq.gz ```
Thanks for this. It seems that you're using a markdown linter, which changed a lot of content. I'm sorry I won't merge this. I might just replace the wrong word,...
Yes, I forgot to update the version number in the software.
I'll tag a new release.
> then this was the error file it's not an error, it's kind of progress and I'll remove this in the next version. You should use `csvtk join` for merging...
updated. please try to 1. read the error message 2. read the help message by adding "-h" 3. and fix it by yourself
I'm not sure, < 10GB probably. It's memory efficient. Just try it, it's faster than waiting for the author's reply.
Title translation: #### Why do these problems occur when running these fasta data with prokka?