Wei Shen

The network (tree) is too big to show.

Good idea! I can also make `list` to accept TaxIds from file and stdin. So you can also use cat names.txt | taxonkit name2taxid | taxonkit list

I don't understand it :(. ``` -r, --no-run-if-empty if there are no arguments, then do not run COMMAND; if this option is not given, COMMAND will be run at least...

Not supported, but there's a workaround solution. docker images -f dangling=true -q | rush 'docker rmi || true'

Sure PR is welcome. To be honest, this project gets complex for me. Some low-level (process and signal) operations contributed by @bburgin are hard to understand for me :( So...

Oh, sorry I've missed this issue. > Do you also archive all the historical taxdump *.dmp files? No, I just download available ones from https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_archive/. > If you are interested,...

Sorry, it's not easy to fix this in a short time. I'm busy recently. Here's a workaround solution -- creating columns that are missed. ``` $ csvtk join -f f...

Sorry, I can't reproduce this. Could you please give more details, or give some data to test? ``` $ seqkit seq --rna2dna hairpin.fa \ | seqkit locate -p AAAGCCATCAC seqID...

Additionally, `GCF_002882255.1`'s URL changed. old: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/882/255/GCF_002882255.1_FW507-14D01 new: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/882/255/GCF_002882255.1_GW456-11-11-14-TSB2/

@donovan.parks' [reply](https://forum.gtdb.ecogenomic.org/t/note-the-number-of-downloadable-gtdb-complete-genomes-mismatched-with-that-in-official-website-due-to-some-records-are-deleted-in-ncbi/560/2) > NCBI generally (never?) deletes data, but data records can become suppressed. For example, GCA_024650005.1 has been suppressed, but you can still find information about this record and...