Quanhu Sheng

Results 5 issues of Quanhu Sheng

## 🐛 Bug If the input data has row with umis=2 but there is no row with umis=1, the chao1 function will return NA ## To Reproduce ```r vec=c(6, 2)...

Thank you so much for this great tool. I recently replace my visualization tools with bamsnap on our pipeline. However, today I just figured out that bamsnap didn't support mm10....

### What happened? We have a dataset with joint call multi-sample VCF files (not from imputation). We converted those multi-sample VCFs to hailmatrix tables with following WDL code in Terra:...

needs-triage

### What happened? I wrote a bed2hailmatrix workflow and ran it on Terra platform to convert from plink bed format to hail matrix format. https://github.com/shengqh/warp/blob/develop/pipelines/vumc_biostatistics/genotype/VUMCBed2HailMatrix.wdl code is pretty simple: ```...

bug
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There is sentence "We demonstrate that Signac accurately classified single cell RNA-sequencing data across diseases, technologies, species and tissues." in the abstract of the paper "Cell type classification and discovery...