shawndy

snippy_multi fails to load reads

3

Running one sample at a time works OK, can't create runme.sh $snippy-multi input.tab --report --html --cpus 7 --ref /home/shawndy/Biomatics/snippy/C01_assembly.fasta > runme.sh causes: ERROR: [C01_/home/shawndy/Biomatics/snippy/C01/Sample1.R1.fastq_/home/shawndy/Biomatics/snippy/C01/Sample1.R2.fastq] missing read/contig data: C01 /home/shawndy/Biomatics/snippy/C01/Sample1.R1.fastq /home/shawndy/Biomatics/snippy/C01/Sample1.R2.fastq...